PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03377.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 293aa    MW: 32215.1 Da    PI: 4.9633
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03377.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-1968121356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L  rqV vWFqNrRa++k
  Pahal.I03377.2  68 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 121
                     4557899**********************************************9 PP
2HD-ZIP_I/II124.45.4e-4067159193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E++++aL++++dal++e ++L++++++L++e++e
  Pahal.I03377.2  67 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIEREFAALRARHDALRAECDALRRDKDALAAEIRE 159
                     69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1861125IPR009057Homeodomain-like
PROSITE profilePS5007116.47163123IPR001356Homeobox domain
SMARTSM003896.0E-1966127IPR001356Homeobox domain
PfamPF000463.4E-1668121IPR001356Homeobox domain
CDDcd000864.39E-1668124No hitNo description
Gene3DG3DSA:1.10.10.605.2E-1974122IPR009057Homeodomain-like
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PfamPF021833.1E-14123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKRPTTRGSS MVSQATTDQQ DSCRYMERHG VDGDGTAAAE RDDVEAGAYD EEEDDEELAG  60
SRGGLGEKKR RLAADQVRAL ERSFEVDNKL DPERKARIAR DLSLHPRQVA VWFQNRRARW  120
KTKQIEREFA ALRARHDALR AECDALRRDK DALAAEIREL REKVERQMDV KLESAEEMLP  180
VAAGTAAAVA TVYKDGSTDS DSSAVFNEEA SPYSGAAFDH QHQHQPHPSF TGFTSFLASS  240
SSLNSSFPSS LYHGVSHLDQ EADGFLSATA AHGFFADEQG SGLGSWYGGE GW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420270.0BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.
GenBankKJ7275560.0KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792353.10.0homeobox-leucine zipper protein HOX8-like isoform X2
SwissprotQ338Z71e-92HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBLA0A2S3IMA90.0A0A2S3IMA9_9POAL; Uncharacterized protein
STRINGPavir.J35191.1.p1e-172(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-29homeobox protein 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]