PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03474.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 344aa    MW: 37145.8 Da    PI: 4.5545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03474.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.31e-082213329127
             NAM  29 eleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk...rknratk..sgyWkatgkdkevlskkgelvglkktLvf 108
                     +   +++++d++++ P dL +          + ++ ++ wyf+++++ k+++gk   +++ra++  +  W++  + k+v+  +g ++ +   L +
  Pahal.I03474.1  22 DS-AFVHRIDVCSAAPADLVAdlepvpgtdlAEDGYSSIWYFYCPKRYKNTQGKpsgHRQRAIAggDTCWHSETRPKPVKGLDG-ATLCN--LSY 112
                     44.5699************755678887754222244589********999766555444544412667**********98444.44554..555 PP

             NAM 109 y..kgrapkgektdWvmheyr 127
                        +g+ ++ ++  W+m ey 
  Pahal.I03474.1 113 GrkEGTGRSFNRMGWCMTEYD 133
                     43378888889*********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.6731151IPR003441NAC domain
SuperFamilySSF1019412.48E-1316151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAAGDDTSSV ALLRGLRSGA VDSAFVHRID VCSAAPADLV ADLEPVPGTD LAEDGYSSIW  60
YFYCPKRYKN TQGKPSGHRQ RAIAGGDTCW HSETRPKPVK GLDGATLCNL SYGRKEGTGR  120
SFNRMGWCMT EYDDDEGGGG DGHVLCKVYR SSSSLARGKL KPSSSSTNPA SSEQTAQRSS  180
ASKRKATADH PQARPNKISH AQACASSSSY ACVDQDFYQH VDHQVQEPLL TDDQTMMPVG  240
IDYESLFLAE EEQEQVLQNT LMTAEEEQLQ QNNLVTAEEQ QFQQNTPFTM DGLLGGPGYD  300
EYSSCSSSTQ LTMDELFSRS SGCYGAPTAM APPDAGFFEG LAF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3IGW50.0A0A2S3IGW5_9POAL; Uncharacterized protein
STRINGPavir.Fb02148.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632