PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03565.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 255aa    MW: 27229.1 Da    PI: 8.6797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03565.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11135182455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Pahal.I03565.1 135 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 182
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-18129198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-12129186No hitNo description
PROSITE profilePS5088816.406131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-18131196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDPAPAVAAE LWRPPHLAAG GGRAVEATSA VTEKSSGGRG GGGAGRRRQR ETPASEDDSS  60
RIVSTSGGGG QDLTDSGAKR FKSNKSNDNN GNLRTEAETD SRSAGKAVSK NPPAPEPPKQ  120
DYIHVRARRG QATDSHSLAE RARREKISER MKVLQDLVPG CNKVIGKASV LDEIINYIQS  180
LQCQVEFLSM KLEAFNAHPS NVVEAFPSKD FASQTYSTAP GLTFDTQTPR EYGQGTSTSE  240
WLHMQIGGAY ERVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796030.10.0transcription factor BHLH089-like
SwissprotQ84T081e-117BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2S3IH300.0A0A2S3IH30_9POAL; Uncharacterized protein
STRINGPavir.J31567.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-66BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]