PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03690.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27239.9 Da    PI: 8.5972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1895149256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Pahal.I03690.1  95 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 149
                     78889************************************************98 PP
2HD-ZIP_I/II124.55.1e-4095182188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr
  Pahal.I03690.1  95 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR 182
                     69*************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1984152IPR009057Homeodomain-like
PROSITE profilePS5007117.18491151IPR001356Homeobox domain
SMARTSM003891.1E-1593155IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-1893154IPR009057Homeodomain-like
PfamPF000465.9E-1695149IPR001356Homeobox domain
CDDcd000861.39E-1595152No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
SMARTSM003401.2E-19151194IPR003106Leucine zipper, homeobox-associated
PfamPF021834.8E-10151182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEQEEVGLAL GLSLGSGHHQ LKEQPSPSSH SCTLLEPSLS LRLPAKDSPA APVRIAAVKR  60
ELRMEEDDQA ADRALYSVAS SALVAPDDDE GCNSRKKLRL TKEQSALLED RFKEHSTLNP  120
KQKAALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCCETLTEE NRRLHRELQQ  180
LRSFNHPHPA AFFMPAAALS ICPSCERLTG APATTTTTTT GGADRPKASG PGRVAHLFNP  240
FTNSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399SRKKLRL
2143151RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798038.10.0homeobox-leucine zipper protein HOX15-like
SwissprotA2Z4C45e-86HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
TrEMBLA0A2S3INL61e-180A0A2S3INL6_9POAL; Uncharacterized protein
STRINGPavir.Ib02193.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-60HD-ZIP family protein