PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03744.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 435aa    MW: 46424.8 Da    PI: 6.6743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03744.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30196254259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Pahal.I03744.2 196 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 254
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-31190256IPR003657WRKY domain
PROSITE profilePS5081132.742190256IPR003657WRKY domain
SuperFamilySSF1182904.71E-26193256IPR003657WRKY domain
SMARTSM007746.3E-37195255IPR003657WRKY domain
PfamPF031061.5E-25197254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MCDFFWLSPA DQGDLSDVVR ASLQQQPPHL RLPATPAPTV CSHGSLGSHL LEVEELLPLQ  60
GRVNLGDDDH EAHLQPQRQL VHGNGGMGLM VGSNALYSQH HPQAQGLAIP KLMSGQPQPP  120
LCASSSRFAE REDDAANAPA VPEELGLDTT MAPHPHAPSI KRRKNQTKKV VCIPAPVAPP  180
PGVGGRPSTS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP  240
SMLVITYTSD HNHPWPTQRN ALAGSIRPAA SASSSSSAKS HHHHQHRSSA AADAVPDPTP  300
PHRHASNVAV ADNATTPAGS ITASVHHHQL LKQEVLDMDN LEPALLDAAA AAADHDLGGM  360
IADMDGALNV LCASNFHYSK KQQQHAPAGQ PEELPEEEDK QLLLDRDPFS FSLLDWVGAS  420
FGVGEAAANK DGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-23164257280Disease resistance protein RRS1
5w3x_D5e-23164257280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187271e-80AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149661e-80AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-80CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546101e-80KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794089.10.0probable WRKY transcription factor 14
TrEMBLA0A2S3IN850.0A0A2S3IN85_9POAL; Uncharacterized protein
STRINGPavir.J03888.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-54WRKY DNA-binding protein 35