PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03820.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 249aa    MW: 27304.8 Da    PI: 6.1746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.11.2e-092064352
             AP2  3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkk 52
                    y+GV   + +g+W+A+I    + +g    f++gkfgta  Aa a+++a ++
  Pahal.I03820.1 20 YRGVAMLP-DGKWRAYIV---NrDG--EPFNIGKFGTATAAALAHDRAILA 64
                    9*******.9******54...4333..*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.8911978IPR001471AP2/ERF domain
SMARTSM003808.4E-51984IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-101978IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-101977IPR016177DNA-binding domain
PfamPF008476.3E-62064IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MATTKPTATL TPTPAAAFQY RGVAMLPDGK WRAYIVNRDG EPFNIGKFGT ATAAALAHDR  60
AILAVLGPDT SGAVLNFRAA FSDTELRFLS GRHAPARPSG VVAMVRRSDD GSYDTELSRF  120
AARAFDAYLD PDLALDVANF RLAHSDMLHH LMEKAAITAG ANANQETCAK AKLDAEREAF  180
VQTAKNKAID ELWVERYHHH RLATGHTFED ENRWPLVVPV NDVRVDWSPG EELIYLPHGS  240
SYVDEMIL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3IMH10.0A0A2S3IMH1_9POAL; Uncharacterized protein
STRINGPavir.Ib03513.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718