PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03824.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 362aa    MW: 38632.9 Da    PI: 6.7058
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03824.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18135187456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Pahal.I03824.1 135 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 187
                     44799***********************************************9 PP
2HD-ZIP_I/II128.52.9e-41133225193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     e+krrls eqv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e+++
  Pahal.I03824.1 133 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAHNKKLHAEIMA 225
                     69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-20107190IPR009057Homeodomain-like
PROSITE profilePS5007116.973129189IPR001356Homeobox domain
SuperFamilySSF466893.89E-19131191IPR009057Homeodomain-like
SMARTSM003892.5E-18132193IPR001356Homeobox domain
CDDcd000866.83E-18134190No hitNo description
PfamPF000468.8E-16135187IPR001356Homeobox domain
PRINTSPR000315.4E-6160169IPR000047Helix-turn-helix motif
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6169185IPR000047Helix-turn-helix motif
PfamPF021839.8E-13189228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKPMATNGMA PSFFPANFLL QMQQPLPHHP QQQEHHHHHH HHHHDAGHEH EAHHLLAPPP  60
PALVSPFLHD FGAAMAAPPM LAGGGGLGKR MYPDGVGGDD SNLHAADPQQ QDGGAASDDE  120
EGSAAAGGGC GGERKRRLSV EQVRTLERSF EVANKLEPER KAQLARALGL QPRQVAIWFQ  180
NRRARWKTKQ LEKDYDALRR QLDAARAEND ALLAHNKKLH AEIMALKGGG SGGGGRQEAA  240
SELINLNVKE TEASCSNRSE NSSEINLDIS RPPAPAAADE SPAAMNSHRG LPFYASAAVD  300
QLLHNGHPSP AAAPKMELGH GATADTPSAT AGGSFGSLLC GAVVDEQPPF WPWADGHHNF  360
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137ERKRRL
2181189RRARWKTKQ
3226235KGGGSGGGGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796230.10.0homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7344e-94HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL54e-94HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A2S3IMI20.0A0A2S3IMI2_9POAL; Uncharacterized protein
STRINGPavir.Ia02126.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]