PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03829.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 95aa MW: 10312.7 Da PI: 9.4376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03829.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8e-07	22	61	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +i + ++L+ llP+a ++ ++ a +L++++ YI+sL Pahal.I03829.1 22 QISDLVAKLQALLPEARLRSNDRVPSARVLQETCSYIRSL 61 789999*******8899*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.737	7	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-8	21	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-7	21	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MSSRRSRSRA SSGGASRISD EQISDLVAKL QALLPEARLR SNDRVPSARV LQETCSYIRS 60 LHREVDDLSD RLSELLATAD VSTAQAAVIR SLLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093869	6e-97	FP093869.1 Phyllostachys edulis cDNA clone: bphyst028g12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983143.1	5e-58	transcription factor ILI7
Refseq	XP_025797606.1	5e-58	transcription factor ILI7
Swissprot	A2Z730	1e-43	ILI7_ORYSI; Transcription factor ILI7
Swissprot	Q338G6	1e-43	ILI7_ORYSJ; Transcription factor ILI7
TrEMBL	A0A2S3IMI6	1e-56	A0A2S3IMI6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C6W6	1e-56	A0A2T7C6W6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SFA9	1e-56	A0A3L6SFA9_PANMI; Transcription factor ILI7
TrEMBL	K4AH62	1e-56	K4AH62_SETIT; Uncharacterized protein
STRING	Si038219m	2e-57	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2675	33	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	4e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.I03829.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]