PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03858.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 237aa    MW: 26928.4 Da    PI: 8.6218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03858.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07125171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       W ++E  +lv++v ++G g Wk +  +      Rt+ ++k++w ++
   Pahal.I03858.1 125 HWKEDEVRQLVNGVSEYGVGKWKDVKTKYFltSIRTPVHLKDKWKNL 171
                      5***************************999988***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.291118176IPR017930Myb domain
SuperFamilySSF466891.94E-13120197IPR009057Homeodomain-like
SMARTSM007171.4E-4122174IPR001005SANT/Myb domain
PfamPF002491.6E-5125171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-11125173IPR009057Homeodomain-like
CDDcd116608.57E-17126173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEDEMDLEQL WTGPRNEKHL QECLGVAGVF GRCSSQMENQ FHSLNVKDGE AADQETIIDD  60
FDTKDYVDPS MLGCFFPNGS LGHGRRGPRR KNTSMRVVES VDVLGLQEPS TSGGRKHSTR  120
KNNEHWKEDE VRQLVNGVSE YGVGKWKDVK TKYFLTSIRT PVHLKDKWKN LVKACKKENG  180
RMLLPLDEAL LERIMEIDKN DPYPKQSNSS HNRLAPPTSP NLHPALRWSV VKSRTK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3ILW21e-176A0A2S3ILW2_9POAL; Uncharacterized protein
STRINGPavir.Ia01844.1.p4e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-12TRF-like 6