PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03861.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 226aa    MW: 26269.9 Da    PI: 9.808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03861.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07136184248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       rWT  E +llv++v ++G g+W+   ++      Rt  ++k++w+++l
   Pahal.I03861.3 136 SRWTGKEVKLLVQGVSKFGVGRWSEMKKKYFktSVRTSVNLKDKWRNLL 184
                      59***********************9999988967************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.379130188IPR017930Myb domain
SuperFamilySSF466891.94E-14132213IPR009057Homeodomain-like
SMARTSM007178.2E-8134186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-12136185IPR009057Homeodomain-like
PfamPF002497.5E-6137184IPR001005SANT/Myb domain
CDDcd116602.16E-19137185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEQPEIKFCS PEMEQTGLFW APVQQEEQGL DGHLGDLQFS LASGTACELQ MENYQAQDDD  60
ALFVLQLLEE ADLDEWLSGG LHQSPLQDTV SHHKMEGRKS GRRGMRKRRI SPWDTFIFGG  120
TTLGRNRKYI TRKNNSRWTG KEVKLLVQGV SKFGVGRWSE MKKKYFKTSV RTSVNLKDKW  180
RNLLRAYQEN VQKYTLLDLE PPLVEQIRKL AAKHPYPKQR HNWYI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797447.11e-169uncharacterized protein LOC112877369
TrEMBLA0A2S3ILT81e-167A0A2S3ILT8_9POAL; Uncharacterized protein
STRINGPavir.Ia01842.1.p1e-141(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-15TRF-like 6