PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03861.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 279aa    MW: 31721 Da    PI: 10.3328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03861.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07192240248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       rWT  E +llv++v ++G g+W+   ++      Rt  ++k++w+++l
   Pahal.I03861.4 192 SRWTGKEVKLLVQGVSKFGVGRWSEMKKKYFktSVRTSVNLKDKWRNLL 240
                      59***********************9999988967************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.379186244IPR017930Myb domain
SuperFamilySSF466891.87E-14188268IPR009057Homeodomain-like
SMARTSM007178.2E-8190242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11192241IPR009057Homeodomain-like
CDDcd116601.97E-19193241No hitNo description
PfamPF002491.1E-5193240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEQPEIKFCS PEMEQTGLFW APVQQEEQGL DGHLGDLQFS LASGTACELQ GGVQGRGEAG  60
EGAAGVQGDV RRGTVWWPRA RVRASFVRPA RDAAPRSTVQ RGDKLEMENY QAQDDDALFV  120
LQLLEEADLD EWLSGGLHQS PLQDTVSHHK MEGRKSGRRG MRKRRISPWD TFIFGGTTLG  180
RNRKYITRKN NSRWTGKEVK LLVQGVSKFG VGRWSEMKKK YFKTSVRTSV NLKDKWRNLL  240
RAYQENVQKY TLLDLEPPLV EQIRKLAAKH PYPKQRHS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797447.11e-137uncharacterized protein LOC112877369
TrEMBLA0A3L6TSQ21e-145A0A3L6TSQ2_PANMI; Uncharacterized protein
STRINGPavir.Ia01842.1.p1e-125(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-14TRF-like 6