PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03958.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

STAT

Protein Properties

Length: 590aa MW: 65225.6 Da PI: 6.4118

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03958.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	186.7	2.8e-58	229	347	1	119
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 l+vvl++a+g+pv kd+evv+sL+yad+g+vveks dd+e+pLLi+++G+e+++ +rpl+++rGra+fklkisqLsskcdn+Lfri+f+++++++ Pahal.I03958.2 229 LEVVLIDAFGEPV-KDKEVVSSLVYADNGMVVEKSrDDSEPPLLITCEGLEYPAISRPLPIIRGRALFKLKISQLSSKCDNKLFRIHFSTLHMRR 322 79********9.*****************9******************************************************* PP STAT 95 ypfleavskpirCisrsrntrsssl 119 ypflea+sk irCisr+r+ r++++ Pahal.I03958.2 323 YPFLEAYSKTIRCISRNRTIRPLGS 347 ******************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MAAPGSECGG SDGGYRDLRD VRVELDPGEA RGGGGGGSAV CFWLYLSSSA RPSSVILHQV 60 TAGDDNKLPF LALGEGNKLL LFPLMRLYKE APATASFYPW TDTTNLSSTN ECPLEKWFHI 120 GCEVTENFMR LHINGDLTAE IHLCSLSGES DHQENANKIS LVGNDGKLEG YMYNIEVSSV 180 LGTIQEQYAK NPPFKLSIDY SSSDGIEECD DGIWNIVGGK ASCRRNFILE VVLIDAFGEP 240 VKDKEVVSSL VYADNGMVVE KSRDDSEPPL LITCEGLEYP AISRPLPIIR GRALFKLKIS 300 QLSSKCDNKL FRIHFSTLHM RRYPFLEAYS KTIRCISRNR TIRPLGSGKR VSSATADETD 360 FLQGLVNADR VNGRLHSHGQ SSVVHFHTPK FPKIEGDGMA KVVDTNKILS QNKHARKMVV 420 SKEPQNAMGT DTSTSNFDSF GSGSSWSGSD VDDVETFSDA VVFRYCLDST YDRSKFLRGA 480 APTFNKEDLV KLADEISLYS GCSHHRNQIL MSKRLLREGA DTWSMISKNN ERALWSSAVP 540 GIITKFMDIA HSVNRGLSEQ DLEVLRGIAG CGEDIGRDEF DRLWKRRMH*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MAAPGSECGG SDGGYRDLRD VRVELDPGEA RGGGGGGSAV CFWLYLSSSA RPSSVILHQV  60
TAGDDNKLPF LALGEGNKLL LFPLMRLYKE APATASFYPW TDTTNLSSTN ECPLEKWFHI  120
GCEVTENFMR LHINGDLTAE IHLCSLSGES DHQENANKIS LVGNDGKLEG YMYNIEVSSV  180
LGTIQEQYAK NPPFKLSIDY SSSDGIEECD DGIWNIVGGK ASCRRNFILE VVLIDAFGEP  240
VKDKEVVSSL VYADNGMVVE KSRDDSEPPL LITCEGLEYP AISRPLPIIR GRALFKLKIS  300
QLSSKCDNKL FRIHFSTLHM RRYPFLEAYS KTIRCISRNR TIRPLGSGKR VSSATADETD  360
FLQGLVNADR VNGRLHSHGQ SSVVHFHTPK FPKIEGDGMA KVVDTNKILS QNKHARKMVV  420
SKEPQNAMGT DTSTSNFDSF GSGSSWSGSD VDDVETFSDA VVFRYCLDST YDRSKFLRGA  480
APTFNKEDLV KLADEISLYS GCSHHRNQIL MSKRLLREGA DTWSMISKNN ERALWSSAVP  540
GIITKFMDIA HSVNRGLSEQ DLEVLRGIAG CGEDIGRDEF DRLWKRRMH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795117.1	0.0	SH2 domain-containing protein B-like
TrEMBL	A0A2S3INI9	0.0	A0A2S3INI9_9POAL; Uncharacterized protein
STRING	Pavir.Ia02279.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-109	SH2 domain protein B

Link Out ? help Back to Top
Phytozome	Pahal.I03958.2