PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04006.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 281aa MW: 30302.2 Da PI: 9.3747

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04006.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4.1e-15	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky Pahal.I04006.1 99 PWTEEEHRKFLDGLRQLGKGDWRGISKGFVTTRTATQVASHAQKY 143 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.785	92	148	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-18	93	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-18	95	147	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-10	96	146	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-11	97	142	IPR009057	Homeodomain-like
CDD	cd00167	3.56E-10	99	144	No hit	No description
Pfam	PF00249	3.3E-12	99	143	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGGVHRPEEE ENGRKAAPVV LRLFGVDVVA DEGPDYNGIG FELRKSSSMP NLAIPSADPL 60 LPHGEAGEGK RYASDDLELA SRQQKRRRRK AQERKKGIPW TEEEHRKFLD GLRQLGKGDW 120 RGISKGFVTT RTATQVASHA QKYFLRQTNP GKKKRRASLF DVGIADFGDD QVPSPPNSAT 180 KPAPSQEIIH TDRGDVPIPS CRGFGGILGN NIQVSELTNY FVTPMAHGET SLASMSSGLL 240 ETASSFNSLE LSIVVNNLEL SIAPPARCGY GGAAGAIKVL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	89	KRRRRK
2	84	95	KRRRRKAQERKK
3	85	95	RRRRKAQERKK
4	151	155	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961225	1e-127	EU961225.1 Zea mays clone 233639 mcb1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795278.1	0.0	transcription factor MYBS2-like
Swissprot	B8BI93	2e-82	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	2e-82	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A2S3INL0	0.0	A0A2S3INL0_9POAL; Uncharacterized protein
STRING	Pavir.Ib02262.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-33	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pahal.I04006.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]