 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pahal.I04078.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 204aa MW: 23370.8 Da PI: 6.5162 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 34.8 | 5.5e-11 | 41 | 93 | 36 | 90 |
FAR1 36 skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
keg r ++k++ e+++ +r+ r+ C+a++k+ ++ dg ++++++e eHnH la
Pahal.I04078.1 41 RKEGIRGPDKRE-ESSKYSRPGIRCMCRACMKIGLK-DGFYYIYEFEPEHNHILA 93
689999999999.99999******************.***************985 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.3E-6 | 41 | 92 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 204 aa Download sequence Send to blast |
MWDDDRLQAP FTAQPEEDEQ QLHVLAMAAE QGRPRAPLAT RKEGIRGPDK REESSKYSRP 60 GIRCMCRACM KIGLKDGFYY IYEFEPEHNH ILAIAIASQA HHLRSQRTIT EPQLASVEAA 120 KVVLILNKAT FDLMAKEAGG IENIEFTREH MKNKLYSKRM LTINQGDTRG VLEYLEKKIS 180 EQEKFFYCSI QVDEDDLIKL PQL* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_022683537.1 | 5e-69 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A1W0W5Z8 | 7e-69 | A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment) | ||||
| STRING | Pavir.Da02291.1.p | 1e-74 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP18 | 32 | 967 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G15090.1 | 3e-13 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Pahal.I04078.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|