PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04112.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 643aa    MW: 67036.7 Da    PI: 6.5088
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04112.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2875.2e-882836412374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     v++L e+A+  ++gd+  a+++Larl+ +   a p+g+p+ R a+yf+eAL+  l+     + +a +p  +++++++ +l a+k+fsevsP+l+f
  Pahal.I04112.1 283 VDQLAEAAKLAEAGDAFGAREILARLNYRlpaAPPAGTPLLRSAFYFKEALRLALSP----TGEAPAPPVSTPYDVVLKLGAYKAFSEVSPVLQF 373
                     689************************9999899999******************99....77778788888899******************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +hlt+ qa+l+++ g+ r+H++Dfdi++G QW++L+q+La+R  ++++l++T+++s+++++  el+ ++e+L+ fA+elgv ++f v+   ++++
  Pahal.I04112.1 374 AHLTCVQAVLDEIGGAGRIHVLDFDIGMGEQWASLMQELAQR-CPAATLKVTALVSSATHHPLELQLIHENLSGFAAELGVFLQFAVF---NIDT 464
                     *****************************************9.7889*********9999***************************9...9999 PP

            GRAS 189 leleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     l++ eL ++ +g+a+aV+l +   ++         + +++L+lvk+l +kvvv +++ +d+++ +F++++++a++ +++l++s++a   +++++ 
  Pahal.I04112.1 465 LDPAELvAITSGDAVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVVSMDRGCDRTELPFAAHLFQAFQSCVSLLESVDAV-RPDADAV 550
                     99999945566***********99998........4566*********************************************998.6788999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+Er+l+++ ++  v +++++  +  +    Wr  + +aGF pv+ s++a++qa++ll++++  g+rve++ g+l+l+W++ +LvsvSaWr
  Pahal.I04112.1 551 AKIERFLVQPGVERRVVARHRA-AAMDKPPLPWRTVFASAGFVPVQASTFAESQAEALLKRMALMGFRVEKRGGALCLYWQRGELVSVSAWR 641
                     **************99999998.666777889***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.62256621IPR005202Transcription factor GRAS
PfamPF035141.8E-85283641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MRGMLFAGSA REGHTGTLLL LQQQQQGLAA GKVSGAGGLW EPTSVLDHRH SPSPSPPTSA  60
STLSSPLGAA TAGVAALAGA NAKNVSPPPP AAAWPGGAAG EEAAVGGKEE WQLTPLDMGL  120
GAGEGWDATG SVLSDGAAPP GLAPDHTFLR WIIGGEDASA GMGSVMDPPV LELDHAPSMM  180
SPAFGSNMPF APAMEDTKAP PFGHASNLLL HHHQHHPQPH AAFFGSHPSF DAAPQTPKRH  240
HPMAPAPAPK LQSFPGPAAP AGGFVPAMKP KAEAANDEAA AAVDQLAEAA KLAEAGDAFG  300
AREILARLNY RLPAAPPAGT PLLRSAFYFK EALRLALSPT GEAPAPPVST PYDVVLKLGA  360
YKAFSEVSPV LQFAHLTCVQ AVLDEIGGAG RIHVLDFDIG MGEQWASLMQ ELAQRCPAAT  420
LKVTALVSSA THHPLELQLI HENLSGFAAE LGVFLQFAVF NIDTLDPAEL VAITSGDAVA  480
VHLPVGSAHV AAMPAILRLV KRLGAKVVVS MDRGCDRTEL PFAAHLFQAF QSCVSLLESV  540
DAVRPDADAV AKIERFLVQP GVERRVVARH RAAAMDKPPL PWRTVFASAG FVPVQASTFA  600
ESQAEALLKR MALMGFRVEK RGGALCLYWQ RGELVSVSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2531464132375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277570.0KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797438.10.0scarecrow-like protein 6
TrEMBLA0A2S3INU60.0A0A2S3INU6_9POAL; Uncharacterized protein
STRINGSi039098m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-85GRAS family protein