PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04220.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 282aa MW: 30187.2 Da PI: 10.2511

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04220.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.2	1.9e-29	34	131	1	85
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kv tpsdv+k++rlv+pk++ae++ g ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v Pahal.I04220.1 34 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldaaaaaaaaaaG--AGKGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTV 126 99************************99999988888542..347789***************************************** PP EEEE- CS B3 81 vFkld 85 +F++ Pahal.I04220.1 127 LFSRG 131 *54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-39	29	143	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-30	31	131	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.55E-26	32	130	No hit	No description
Pfam	PF02362	2.2E-27	34	147	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-21	34	149	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.719	34	149	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEFTPAHAHG GVEDSERARG GGGGAAWVEK EHMFEKVVTP SDVGKLNRLV IPKQHAERYF 60 PALDAAAAAA AAAAGAGKGL VLSFEDRAGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKRL 120 GAGDTVLFSR GAGQGPARAR LFIDFRRRRQ DLAFLQPPLA SAQRFMPLSS VPICPWQDYS 180 AYGASVPAPS SRHVFFLRPQ QVPAAVVLTS VPVSVAASTV EATRSKRVRL FGVNLDCPQD 240 GEDDGARVTR TASTLLQLPS PSSSTSSSTA GKDACSLDLG L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-52	29	148	3	113	B3 domain-containing transcription factor NGA1
5os9_B	4e-52	29	148	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796710.1	0.0	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	1e-103	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A2S3IP33	0.0	A0A2S3IP33_9POAL; Uncharacterized protein
STRING	Pavir.J06582.1.p	1e-164	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	3e-46	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.I04220.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]