PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04259.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 386aa    MW: 41620.3 Da    PI: 7.831
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04259.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.58.1e-10241299563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR +A rs +R+  +i+eLe+kv+ L++e ++L  +l  l+  +a l +++
  Pahal.I04259.1 241 KRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSAGLATQN 299
                     999*********************************************99998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-16237301IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.691239302IPR004827Basic-leucine zipper domain
PfamPF001702.9E-9241299IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-10241292No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-10241298No hitNo description
CDDcd147035.47E-22242293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNTANGNGLA HHHHVQASMP PPHQKQRPGL PPTPPPSAPG SHSLHHAGAC ADDGSAAQAQ  60
AQGGLPPRRA HRRSRSDVAF GYFQPLPPPS PTPKAEAGGW GSLPGGAAGD DLFNAYMSME  120
GMDGLNNSDG DSRGSSGMRT NGAESSENES EDYGGGDSQF LLWGDAGRKK RNAAGEPAPP  180
PPARHARSLS MDSLMGKLSF SANGEPGRFS LEFGGGEFTP AEMKRIMADE KLAEMALADP  240
KRVKRVLANR QSAARSKERR MRYIAELEQK VQILQTEATT LSAQLTLLQR DSAGLATQNN  300
ELKFRLQAME QQAQLRDALN EALSTEVQRL KLGDTSSSGN MPHQQMQLRC QSQMVELPKQ  360
QGEQIPFYQL EQREQNGAPR NHDPK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352290.0BT035229.1 Zea mays full-length cDNA clone ZM_BFb0046N14 mRNA, complete cds.
GenBankJX4699260.0JX469926.1 Zea mays subsp. mays clone UT3184 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796872.10.0transcription factor RF2b-like
TrEMBLA0A2S3IP570.0A0A2S3IP57_9POAL; Uncharacterized protein
STRINGPavir.Ia02926.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35363576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-58bZIP family protein