PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04414.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 190aa    MW: 21154.1 Da    PI: 11.6164
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04414.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.37.4e-121588269
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegek 69
                    W++ e+ +Li+a    ++r r + l+ ++W++ ++++      + + f+r+ +qC+ +++ l+kryk++ +++ 
  Pahal.I04414.1 15 WSDGETSTLIDAWGGAHQRRRPRGLRLKDWRAAASAVnahraaAGHRFNRTRVQCQTRIRTLKKRYKEELARQP 88
                    *****************************************99999*********************9876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1814100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPSRKPAPEC ASGNWSDGET STLIDAWGGA HQRRRPRGLR LKDWRAAASA VNAHRAAAGH  60
RFNRTRVQCQ TRIRTLKKRY KEELARQPPS GWPHLPRLRA FLAGPDGPPP GFPARRRRPS  120
SWSGLAASWT VPRRPRDAAA RSTGFCTAAV VTKLAEVYER VELARIGAEE EKMEMEVQQA  180
MLDVVKVEQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792102.11e-108uncharacterized protein LOC112873338
TrEMBLA0A2S3ISL91e-111A0A2S3ISL9_9POAL; Uncharacterized protein
STRINGPavir.J18525.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-08sequence-specific DNA binding transcription factors