PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04583.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 151aa MW: 16702.7 Da PI: 9.0339

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04583.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.7	7.8e-16	24	83	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++ + ++a++++e+ Pahal.I04583.1 24 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVEQEN 83 58*****************************************************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.9E-12	20	75	No hit	No description
SMART	SM00338	1.2E-17	21	85	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	23	86	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-12	24	83	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.25E-10	25	75	No hit	No description
CDD	cd14702	4.22E-16	26	77	No hit	No description
PROSITE pattern	PS00036	0	28	43	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006971	Biological Process	hypotonic response
GO:0009267	Biological Process	cellular response to starvation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000693	Biological Process	positive regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MSSSSLSPAG RTSGSDGDSA ADTHRREKRR LSNRESARRS RLRKQQHLDE LVQEVARLQA 60 ENARVAARAA DIASQYARVE QENTVLRARA AELGDRLRSV NEVLRVVEEF SGVAMDIQEE 120 IPADDPLLRP WQLPYPAAAM PIGGAHMLRY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	43	RRSRLRK
2	37	44	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00419	DAP	Transfer from AT3G62420	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034289	1e-173	BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBank	BT088408	1e-173	BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBank	EU964736	1e-173	EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.
GenBank	JX469954	1e-173	JX469954.1 Zea mays subsp. mays clone UT3216 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808697.1	1e-103	ocs element-binding factor 1
Swissprot	P24068	1e-96	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A2S3HEL4	1e-102	A0A2S3HEL4_9POAL; Uncharacterized protein
STRING	Pavir.Cb00560.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	5e-30	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Pahal.I04583.1

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]