PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04672.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1026aa    MW: 113946 Da    PI: 5.4408
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04672.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.51.2e-53211382118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e+n +fq
  Pahal.I04672.1  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEDNINFQ 115
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rr+yw+Lee++ +ivlvhyle+k
  Pahal.I04672.1 116 RRTYWMLEEDFMHIVLVHYLETK 138
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.64917143IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-6446533IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.58E-16447533IPR014756Immunoglobulin E-set
PfamPF018332.1E-6447525IPR002909IPT domain
SuperFamilySSF484037.93E-16618741IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-16642743IPR020683Ankyrin repeat-containing domain
CDDcd002041.47E-11642739No hitNo description
PROSITE profilePS5029715.937648713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.683648680IPR002110Ankyrin repeat
PROSITE profilePS500888.736681713IPR002110Ankyrin repeat
SuperFamilySSF525401.78E-8840893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407843872IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56866890IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MASAEARRLA VVPKLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGED NINFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQTIE GESSLSGQAS  180
EYEEAESDIY SGGAGYHSFT RVQQHENGTG PVIDSSVFSS YTPASSIGNY QGLHAMTQNT  240
SFYPGNQHSS LVLNGSSTGV ATDGYANQTD LTSWNPVIEL DNGPVQMPLQ FPVPPEQGTS  300
TEGLGIDYLT FDEVYSDGLS LKDIGAAGAG GESFWQFPSA TGDLSTAENS FPQPNDDSLE  360
AAIGYPFLKT QSSNLSDILK DSFKKTDSFT RWMSKELLEV EDSQIQSSSG AYWSTEQADS  420
IIEASSREPL DQFTVSPMLS QDQLFSIVDF APTWTYVGSK TKILVTGSFL NNSQVTEKCK  480
WSCMFGEVEI PAKILADGTL LCYSPQHKPG RVPFYITCSN RLACSEVREF EFRPTVTQYM  540
DAPSPHGATN KVYFQIRLDK LLSLGPDEYQ ATVSNPSLEM IELSKKISSL MTTNDEWSNL  600
LKLACDNEPS TDDQQDQFAE NLIKNKLHVW LLNKVGVGGK GPSVLDDEGQ GVLHLAAALG  660
YDWAIRPTLA AGVNINFRDV HGWTALHWAA FCGRERTVVA LIALGAAPGA LTDPSPDFPE  720
STPADLASAN GQKGISGFLA ESSLTSHLQA LNLKEANMAE ISGLPGIGDV TERDSLQPPS  780
GDSLGPVRNA AQAAARIYQV FRVQSFQRKQ AAQYEDDKGG LSDERALSLL SVKPSKPGQL  840
DPLHSAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI  900
LRWRRRGAGL RGFRSTEGSS EGSSGGTSSN MIKDKPSGDD YDFLQEGRKQ TEERLQKALA  960
RVKSMAEYPE ARDQYQRILT VVSKMQESQA MQEKMLEEST EMDDGYFMNE LQELWDDDTP  1020
LPGYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793388.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A2S3IMM70.0A0A2S3IMM7_9POAL; Uncharacterized protein
STRINGPavir.Ia02749.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains