PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04695.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 543aa    MW: 60179.9 Da    PI: 5.9188
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04695.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.84.2e-1311725411373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++l+++c +av+++d  +++ l+++l +l s +gdpmqRl ay++e++ arla+s++ lyk+l+++e +   sse +++++l++e++P++kf++
  Pahal.I04695.1 172 LKQLIIACGKAVAENDVFATELLISELGQLISVSGDPMQRLGAYMLEGIVARLASSGNMLYKSLKCKEPT---SSELMSYMHLLYEICPFFKFGY 263
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp  RiTg+++++s   +   l  +g+rL+++A+++g+pfefn+ v  + ++
  Pahal.I04695.1 264 MSANGAIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPYTRITGIDDSNSAyaRGGGLDIVGRRLHSVAQSCGLPFEFNA-VPAASHE 357
                     ******************************************************988899999************************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l +L+v+pgE +aVn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f+s+++ lpr+++ r+
  Pahal.I04695.1 358 VQLGHLAVRPGEIIAVNFAYQLHHVPDESVSMENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMFESIDVALPRDDRRRM 452
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++++ll+ ++s  yr+ee+ g l+lgWk+r Lv+ SaW
  Pahal.I04695.1 453 SAEQHCVARDIVNLIACEGAERVERHELFGKWKARFAMAGFRPYPLSSVVNNTINTLLQSYNSC-YRLEERGGVLYLGWKNRVLVVSSAW 541
                     **************************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.481146523IPR005202Transcription factor GRAS
PfamPF035141.4E-128172541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSARASNRPY KISEDSQMPY YNNSATVEEN DRFHVMQNNL DHHHSSPDDG SQKINSSNTQ  60
IFEAQYCTLE SSSANVVYPA QSSTSSHSIS PLSGSPLSQH DSHSEHTYSS PPSASCLTEV  120
ADLQIKLKEL ENAILGPELD ITSDSPESFL QANVQLRPDN WRQLLGIDAG DLKQLIIACG  180
KAVAENDVFA TELLISELGQ LISVSGDPMQ RLGAYMLEGI VARLASSGNM LYKSLKCKEP  240
TSSELMSYMH LLYEICPFFK FGYMSANGAI AEAIKGENFV HIIDFQIAQG SQWITLIQAL  300
AARPGGPPYT RITGIDDSNS AYARGGGLDI VGRRLHSVAQ SCGLPFEFNA VPAASHEVQL  360
GHLAVRPGEI IAVNFAYQLH HVPDESVSME NHRDRIIRMI KSINPRVVTL VEQESNTNTA  420
PFFPRYMETL NYYTAMFESI DVALPRDDRR RMSAEQHCVA RDIVNLIACE GAERVERHEL  480
FGKWKARFAM AGFRPYPLSS VVNNTINTLL QSYNSCYRLE ERGGVLYLGW KNRVLVVSSA  540
WC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-601745416374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587660.0HQ858766.1 Zea mays clone UT1682 GRAS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793720.10.0scarecrow-like protein 21
RefseqXP_025793721.10.0scarecrow-like protein 21
RefseqXP_025793722.10.0scarecrow-like protein 21
RefseqXP_025793723.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2S3IMJ10.0A0A2S3IMJ1_9POAL; Uncharacterized protein
STRINGPavir.Ia02739.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]