PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04725.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25217.5 Da    PI: 9.4503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04725.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1883136356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  Pahal.I04725.1  83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 136
                     67789***********************************************98 PP
2HD-ZIP_I/II119.51.7e-3883170289
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E ++e+Lkr++ +l+een+rL++eveeLr+
  Pahal.I04725.1  83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTELECEYLKRCFGSLTEENRRLQREVEELRA 170
                     9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-1866136IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1973139IPR009057Homeodomain-like
PROSITE profilePS5007116.90878138IPR001356Homeobox domain
SMARTSM003893.3E-1580142IPR001356Homeobox domain
CDDcd000863.15E-1581139No hitNo description
PfamPF000469.3E-1683136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
SMARTSM003402.7E-22138181IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9138171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGSTSPSGLE LTMAVPGLSS SSGSEGGFGC NAGSGSGNGN AAMRDLDMNQ PASGGEEEEF  60
PMGSVEEDEE ERGAGAGGPH RPKKLRLSKE QSRLLEESFR LNHTLTPKQK EALAVKLKLR  120
PRQVEVWFQN RRARTKLKQT ELECEYLKRC FGSLTEENRR LQREVEELRA MRVAPPTVLS  180
PHTRQPLPAS ALTMCPRCER ITAATGAPAA RTPRPAAAAA NPFHPRRPSA AF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9661900.0EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819203.11e-167homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX11e-129HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-129HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2S3HTY81e-165A0A2S3HTY8_9POAL; Uncharacterized protein
STRINGSi002823m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-56homeobox-leucine zipper protein 17