PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00243.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 294aa    MW: 30976.7 Da    PI: 9.4598
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00243.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19120174256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Pahal.J00243.1 120 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 174
                     678899***********************************************98 PP
2HD-ZIP_I/II124.93.6e-40120210192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk
  Pahal.J00243.1 120 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 210
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-18101174IPR009057Homeodomain-like
PROSITE profilePS5007116.536116176IPR001356Homeobox domain
SuperFamilySSF466894.6E-18118185IPR009057Homeodomain-like
SMARTSM003891.5E-16118180IPR001356Homeobox domain
CDDcd000865.20E-15120177No hitNo description
PfamPF000469.1E-17120174IPR001356Homeobox domain
PRINTSPR000314.1E-5147156IPR000047Helix-turn-helix motif
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PRINTSPR000314.1E-5156172IPR000047Helix-turn-helix motif
SMARTSM003405.2E-21176219IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9176210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMMPQSGSLD LGLSLGLTSQ GSLSSSTTSG ALSPWAAALS SVVGDVVARR DAHAQQQHGA  60
VAAAADPDRG AMRASTSPDS AAALSSGASG DNKRERELER TGSGGVRSDE EDGADGAGGR  120
KKLRLSKDQA AVLEECFKTH STLNPKQKVA LANRLGLRPR QVEVWFQNRR ARTKLKQTEV  180
DCEYLKRWCE RLADENKRLE KELADLRALK AAPSPAAQPA SPAATLTMCP SCRRVAAAGA  240
PANHQQQCHP KSNAAANVVP SHCQFFPAAV DRTGQSTWNA ASAAAPLVTR ELF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932881e-156FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811981.10.0homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE32e-97HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U862e-97HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A2S3HLX70.0A0A2S3HLX7_9POAL; Uncharacterized protein
STRINGPavir.J26517.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-53homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]