PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00245.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 271aa    MW: 27984.5 Da    PI: 9.8414
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00245.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1990144256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Pahal.J00245.1  90 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTK 144
                     788899***********************************************98 PP
2HD-ZIP_I/II126.61.1e-4090179191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL kev+eLr +l
  Pahal.J00245.1  90 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLGKEVAELR-AL 179
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-1974140IPR009057Homeodomain-like
PROSITE profilePS5007116.60186146IPR001356Homeobox domain
SMARTSM003893.8E-1788150IPR001356Homeobox domain
SuperFamilySSF466892.55E-1889155IPR009057Homeodomain-like
CDDcd000867.87E-1690147No hitNo description
PfamPF000466.7E-1790144IPR001356Homeobox domain
PRINTSPR000311.5E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5126142IPR000047Helix-turn-helix motif
SMARTSM003401.1E-20146189IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-10146179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLGLAALQ PSFCYSGNAA AAAAEREASP TAAEERERRC SPAGSPVSSG  60
SGSGGKRAAA ERSAGAGSGS GDEDDDGAAR KKLRLSKDQA AVLEECFKTH HTLTPKQKVA  120
LASSLGLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRWCE QLAEENRRLG KEVAELRALN  180
AAAAAPAPAP PLTTLTMCLS CRRVASSSPS NASSRIPATH AHVAANAGGM ASPAAATLPG  240
HRQFFCGFRD AGAAAYGTSS GLAKAVKAAR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681200.0EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.10.0homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9314e-71HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE54e-71HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A2S3HLY50.0A0A2S3HLY5_9POAL; Uncharacterized protein
STRINGPavir.Da02255.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.14e-49homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]