PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J00671.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 215aa MW: 21841.9 Da PI: 7.9313

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J00671.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93	3.5e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA r+ +Pv+Gavg++ +++++l+q+ Pahal.J00671.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWHLCQA 96 6*******************9998656778************************************************************* PP DUF260 91 kaelall 97 +++++l+ Pahal.J00671.1 97 AVDTVLR 103 9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.919	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-25	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGGDCGAG 120 AGSGDLYGPA AGKRARGWST FSTAKRVRTA GEAAPPAAEA SCDLGLCLSP GSPPAPGERR 180 APLLRPGTPS MSSDESVTTT TGGDREPVLL NLFP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097640	1e-160	FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795340.1	1e-152	LOB domain-containing protein 37
Swissprot	Q9FN11	2e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2S3IPG1	1e-151	A0A2S3IPG1_9POAL; Uncharacterized protein
STRING	Pavir.Ia03080.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-69	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Pahal.J00671.1

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]