PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00726.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 180aa    MW: 20875.2 Da    PI: 10.2883
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00726.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-161111783499
                     SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  34 ktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +tl + +++g+sWev +++   r++++   l kGWk+F+++n+L++gD ++F+l ++++ +++v+++r+
  Pahal.J00726.1 111 RTL-MLHRHGKSWEVMCRIqvrRGHRNFQNLCKGWKRFARDNNLRVGDLCLFELLKTKNYTMNVHIVRE 178
                     344.5778*********997766666668899***********************99********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2174178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-2174177IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-1877177No hitNo description
SMARTSM010191.3E-479179IPR003340B3 DNA binding domain
PROSITE profilePS5086312.67580179IPR003340B3 DNA binding domain
PfamPF023628.4E-1583178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKEESIDISS NCANLPMKTP EARRKAWKQR DGRDSKSSEE HESHSVPSYI LPRCTSLTNV  60
QKKQLKEKVG AICSEIPIYV CVMKKSNVST IHQSMRFSGA YSEAYLPFEG RTLMLHRHGK  120
SWEVMCRIQV RRGHRNFQNL CKGWKRFARD NNLRVGDLCL FELLKTKNYT MNVHIVREK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791592.11e-125putative B3 domain-containing protein Os03g0621600
TrEMBLA0A270R9501e-132A0A270R950_9POAL; Uncharacterized protein
STRINGPavir.Ib03968.1.p7e-93(Panicum virgatum)
STRINGPavir.J11114.1.p5e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09related to vernalization1 1