PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J01055.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 200aa MW: 21692.8 Da PI: 5.102

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01055.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.5	1.8e-11	76	154	1	85
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f +v+++s v k+ +lv+p + ++ +++ + +l +grsW ++ + k ++ + + W++F+ +n L++gD +vF+l+ Pahal.J01055.1 76 FTTVMSKSQVQKQFQLVIPARLHRHLP--EAR-VPAVL-LCRGRSWAASYCGDLKCKK--IDAAWRDFALDNALRVGDACVFELT 154 8899***************985443..222.33444.459****66666555..8999*****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-17	69	177	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-14	71	154	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.49E-14	74	177	No hit	No description
Pfam	PF02362	1.2E-9	76	155	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0083	76	179	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.166	76	179	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
METPGLKSQL IQMEIPGFPW KKHQPDPDGC TKLELQAGGI KPKVEPCEEQ ERSPPLPPPA 60 PDDWEVTPLS GDHPFFTTVM SKSQVQKQFQ LVIPARLHRH LPEARVPAVL LCRGRSWAAS 120 YCGDLKCKKI DAAWRDFALD NALRVGDACV FELTAAAAGS TGSEGDGEVV FRVQVLRGGL 180 PEEITSKGAT SDEPLVIVD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	1e-145	B3 domain-containing protein Os06g0112300-like isoform X1
Swissprot	Q9LHY9	3e-45	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A2T8JF47	1e-134	A0A2T8JF47_9POAL; Uncharacterized protein
STRING	Pavir.Db02470.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Link Out ? help Back to Top
Phytozome	Pahal.J01055.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]