PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01057.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 252aa    MW: 26512.8 Da    PI: 4.458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01057.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-094282248
                     T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                     + W++Ia +++ gRt++++k++w+++l
   Pahal.J01057.2  4 R-WSSIATKLP-GRTDNEIKNYWNTHL 28
                     5.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.918132IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-14329IPR009057Homeodomain-like
SuperFamilySSF466891.87E-8335IPR009057Homeodomain-like
CDDcd001676.17E-8328No hitNo description
PfamPF002492.2E-7428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYNRWSSIAT KLPGRTDNEI KNYWNTHLRK KLLSMGIDPV THRPRTDLNL LAGIPNLLAA  60
AQTATCWDIN ALRLQADAAK YQLLQGLLRA LATPPAAPSV DLMALLAATN GGVSVSQPAG  120
VDQQGTRSAQ YDGLLNLPAL TSVPAATLPA MSSFSGLLSS FGAGDGLSST ELGHSGASGS  180
NMTAAMAPPL VAAKECNDGG TSTPCEDTPA SSPFEGLENL NLDDEFSSDS WKDLLEQMSW  240
LNNPNDQQQL M*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0572603e-70EF057260.1 Panicum virgatum microsatellite PVSSR146 and microsatellite PVSSR147 sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811879.11e-177transcription factor MYB93-like
TrEMBLA0A2S3HMF90.0A0A2S3HMF9_9POAL; Uncharacterized protein
STRINGPavir.J23197.1.p1e-136(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-30myb domain protein 9