PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01074.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 190aa    MW: 21484.7 Da    PI: 9.7788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01074.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.34.1e-252104199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kv tpsdv+k++rlv+pk+ ae+h         ++++ l + d +g    W+++++y+ +s++yv+tkGW+++v++++L +gD+v F    r+
  Pahal.J01074.1   2 FEKVVTPSDVGKLNRLVVPKHLAERHlplpgAAARAGGTVLCFHDARGgeAAWRFRYSYWSSSQSYVMTKGWSRYVHDKRLAAGDTVSFC---RD 93 
                     99***************************98555678899*****9998999**************************************...56 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l++  +r+
  Pahal.J01074.1  94 GARLYIDCRRR 104
                     67888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.33E-16195No hitNo description
Gene3DG3DSA:2.40.330.101.0E-301104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-25199IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.8712105IPR003340B3 DNA binding domain
PfamPF023625.0E-222104IPR003340B3 DNA binding domain
SMARTSM010193.4E-152105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MFEKVVTPSD VGKLNRLVVP KHLAERHLPL PGAAARAGGT VLCFHDARGG EAAWRFRYSY  60
WSSSQSYVMT KGWSRYVHDK RLAAGDTVSF CRDGARLYID CRRRKRAVVV PVPAVPPQQQ  120
QQQQQAFFFP QAAAAALQVQ QRLVVAPPRV VVSMKEEEEE EEDEARRRRC LRLFGVNLEL  180
EPLLLDLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-40110413117DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813830.11e-137B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS556e-54Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A2T8JF661e-135A0A2T8JF66_9POAL; Uncharacterized protein
STRINGSi008509m3e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-38related to ABI3/VP1 1