PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01155.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 499aa    MW: 56301.4 Da    PI: 9.8894
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01155.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-132741997
                    -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    p++f++++ gk   s t++l +++g  ++v++  +k+ ++++l+ GW +Fv+a++++e+ f++F+++++s f   v ++
  Pahal.J01155.1  2 PNRFLKNFAGK--LSGTIKLVSPNGSLYDVEV--TKRFNKVMLRHGWGDFVDAHHIEENNFLLFRHIENSLF--EVLIL 74
                    99999888877..6779***************..********************************998888..56555 PP
2B338.71.8e-122182991697
                     EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                     l +pk +a  h + +++   +tl+   ++++W  ++  rk +++y+l++ W +Fv++n++++ D++++   +  ++f+++v ++
  Pahal.J01155.1 218 LAIPKGYAFGHFLHERT--NVTLQRpGKSKKWHPRFYQRKDKRMYMLRGQWLDFVRDNHVQVEDICILVPAKGgRRFTFTVYLL 299
                     7899***9999888655..6888884667*******76999999************************9775558888888765 PP
3B355.11.3e-17404495699
                     ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++dv+ + +++ l k+fa+ h  ++ +++  +l +   ++W+ k+ +  +s+r +l +GW  Fv++ngL++gD+++F+l+++ e +++v+++++
  Pahal.J01155.1 404 MNADVTYRyCIMELGKRFAAPHL-PH-RGQ-TVLLQCMKKVWKTKMVIHSGSRRWFLVGGWTTFVRDNGLRVGDICLFELKKKGELTMRVHIISR 495
                     467776666999*******9994.33.343.56667799*******9988888999999*********************9999999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.028177IPR003340B3 DNA binding domain
CDDcd100171.30E-15175No hitNo description
PfamPF023621.3E-11273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-16279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18279IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0036577IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-15194298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16195299IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0072202302IPR003340B3 DNA binding domain
CDDcd100174.09E-14202297No hitNo description
PROSITE profilePS508639.784203302IPR003340B3 DNA binding domain
PfamPF023621.2E-10218299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-21389494IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-21392496IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-17400494No hitNo description
PROSITE profilePS5086312.52400496IPR003340B3 DNA binding domain
SMARTSM010196.2E-11400496IPR003340B3 DNA binding domain
PfamPF023626.3E-15405495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MPNRFLKNFA GKLSGTIKLV SPNGSLYDVE VTKRFNKVML RHGWGDFVDA HHIEENNFLL  60
FRHIENSLFE VLILDADGCE KVFSCAGIKN TQSVQDKIVD SVYISSSSFH DPTESSASER  120
LVRCEKGGSS HREKTAKMVA TSSSSESSGE DNLSENESFQ LDDLQTNPGP NYVLSRGSYL  180
SKAQEERVMA IIQEIQPEST VYVAVMRKCH ILKPGPYLAI PKGYAFGHFL HERTNVTLQR  240
PGKSKKWHPR FYQRKDKRMY MLRGQWLDFV RDNHVQVEDI CILVPAKGGR RFTFTVYLLH  300
ATATHSRGGT AFQRVGSFHG RSSTKMASAV HIKEASSDDH VSSDSDKDEA SHKSLKSNSG  360
GPSEAPYIVS SKSCLSQSQK KIVEEKVRAI QSEVPVFVAI MKKMNADVTY RYCIMELGKR  420
FAAPHLPHRG QTVLLQCMKK VWKTKMVIHS GSRRWFLVGG WTTFVRDNGL RVGDICLFEL  480
KKKGELTMRV HIISREQF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
SwissprotQ6AV211e-176Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A270R6860.0A0A270R686_9POAL; Uncharacterized protein
STRINGSi035266m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-14B3 family protein