PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J01166.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 424aa MW: 44543 Da PI: 8.2306

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01166.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	167	225	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a Cpv+k+v+r+aed +++++tYeg+Hnh+ Pahal.J01166.2 167 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAnACPVRKQVQRCAEDRSILITTYEGTHNHP 225 7*************************999*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-33	151	227	IPR003657	WRKY domain
SuperFamily	SSF118290	1.22E-27	159	227	IPR003657	WRKY domain
PROSITE profile	PS50811	28.747	161	227	IPR003657	WRKY domain
SMART	SM00774	9.8E-36	166	226	IPR003657	WRKY domain
Pfam	PF03106	5.8E-27	168	225	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MHACMCAKQL LPAATRDDDD EHKMQQLPAL QAELGRMNEE NQRLRGMLAQ VTTSYQALQM 60 HLLALMQPQA QHPIPPPPPP RQFLGLDPAP EEPSNSSTEV VGSPRRSSST GNNKDLQAAE 120 RSDSPDAAGG PSSTARWLPA ERRQQQEASM RKARVSVRAL SEAPIIADGC QWRKYGQKMA 180 KGNPCPRAYY RCTMANACPV RKQVQRCAED RSILITTYEG THNHPLPPAA MAMASTTSAA 240 ASMLLSGSMP SADGTPMTSG NSFLARAVLP CSSSMATISA SAPFPTVTLD LTHGPPSAAR 300 PLAPMTPQFH LPQAPLYNQS TKFSGLHMSS SDGTGSTPPS AGPPPPIRIG LADTVSAAAA 360 AITADPNFTV ALAAAISSII GGSGGHQQQQ QHGLQQGANA NNNNVTSSSN NTATSNNTNS 420 ETQ*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MHACMCAKQL LPAATRDDDD EHKMQQLPAL QAELGRMNEE NQRLRGMLAQ VTTSYQALQM  60
HLLALMQPQA QHPIPPPPPP RQFLGLDPAP EEPSNSSTEV VGSPRRSSST GNNKDLQAAE  120
RSDSPDAAGG PSSTARWLPA ERRQQQEASM RKARVSVRAL SEAPIIADGC QWRKYGQKMA  180
KGNPCPRAYY RCTMANACPV RKQVQRCAED RSILITTYEG THNHPLPPAA MAMASTTSAA  240
ASMLLSGSMP SADGTPMTSG NSFLARAVLP CSSSMATISA SAPFPTVTLD LTHGPPSAAR  300
PLAPMTPQFH LPQAPLYNQS TKFSGLHMSS SDGTGSTPPS AGPPPPIRIG LADTVSAAAA  360
AITADPNFTV ALAAAISSII GGSGGHQQQQ QHGLQQGANA NNNNVTSSSN NTATSNNTNS  420
ETQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	153	229	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085752	1e-132	BT085752.2 Zea mays full-length cDNA clone ZM_BFc0057C03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817236.1	0.0	WRKY transcription factor 6-like isoform X2
Swissprot	Q9C519	1e-105	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A2T7DTJ6	0.0	A0A2T7DTJ6_9POAL; Uncharacterized protein
STRING	Pavir.Eb00086.1.p	1e-162	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-70	WRKY family protein

Link Out ? help Back to Top
Phytozome	Pahal.J01166.2

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]