PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J01440.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 145aa MW: 17214.6 Da PI: 9.1216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01440.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.2	1.3e-23	31	120	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 kfY++YA + GFsvrk+k +++ ++e+++r+fvCs+eg+r e++ + t+++r++ra tr++C+a+l v+++ +g w+v++++ H+ Pahal.J01440.1 31 KFYDAYALHKGFSVRKDKVSYKPSTKEVIWRRFVCSCEGYRMEKHFEtTDQKRQPRALTRCECNARLDVQRSAsNGIWYVIDFVDVHTEG 120 6**************************************9998776899999*************999***********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-22	31	121	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MEANGYVSLE EIEEYNYVAN QTFNTKEDFF KFYDAYALHK GFSVRKDKVS YKPSTKEVIW 60 RRFVCSCEGY RMEKHFETTD QKRQPRALTR CECNARLDVQ RSASNGIWYV IDFVDVHTEG 120 LMILKKRRQW SFGLVGFVHA RLWK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700767.1	2e-53	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2S3ILD2	1e-104	A0A2S3ILD2_9POAL; Uncharacterized protein
STRING	Si015159m	4e-50	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pahal.J01440.1