PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01494.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 226aa    MW: 25309.5 Da    PI: 9.4152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01494.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-182615626118
             NAM  26 kkleleevikevdiykvePwdLpk...........................................kvka..eek...ewyfFskrdkkyatgk 72 
                     ++    ++i+evd+y++ePwdL+                                            +  +  + +   ewyf s +d+ky++g+
  Pahal.J01494.1  26 DD---LHIIQEVDLYRIEPWDLQGmhvvaslyvynykemkdrsehiinlhfyqsmqsnlsaerckqqQ--QhdD-EqaaEWYFLSYKDRKYPSGT 114
                     33...356**************94589***************************99999999876541..1332.1356**************** PP

             NAM  73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgek 118
                     r+nrat+     atg+dk+vls+ ++  +g++ktL+fykgrap+g++
  Pahal.J01494.1 115 RSNRATA-----ATGRDKPVLSRsSRLIIGMRKTLIFYKGRAPNGKE 156
                     *****99.....9*********8444559***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-1397155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVLFLAWSCS RTGPWELRLH NKTYGDDLHI IQEVDLYRIE PWDLQGMHVV ASLYVYNYKE  60
MKDRSEHIIN LHFYQSMQSN LSAERCKQQQ QHDDEQAAEW YFLSYKDRKY PSGTRSNRAT  120
AATGRDKPVL SRSSRLIIGM RKTLIFYKGR APNGKEDPLD QARVPPAAAT PPGGSRSGRL  180
LGGVPCLPLT IPSQQQPFFF PSRSSYFAAT TPAGGYVGGD GSSSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448830.11e-34NAC domain-containing protein 30
RefseqXP_021318357.11e-34NAC domain-containing protein 30
TrEMBLA0A270R5161e-168A0A270R516_9POAL; Uncharacterized protein
STRINGSb06g034010.14e-34(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.15e-26vascular related NAC-domain protein 7