PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01521.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 342aa    MW: 38730.7 Da    PI: 10.0979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01521.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07130193147
                      TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                      r+ WT  E+e+lv+a   + ++            W  Ia+ ++       +Rt+kq+k++w+ y
   Pahal.J01521.1 130 RLDWTIAEEEKLVHAWVYHSNDsitgnnqiglsFWGQIAEIFNstaepsCRRTAKQLKDHWNVY 193
                      789**********************************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.272125194IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-5126194IPR009057Homeodomain-like
SuperFamilySSF466894.37E-5129202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTGWSPVFHT FTDLLQSDGS QASPQDESSP MHRRSDVNSS PRPRALFPLL HLRLRGHLHR  60
HIIIRRRSGT EGPYPPPSYA PPPYAPPPYA PPLYSPYPPP PHAAPTVPSP VSVESQNEGA  120
GATEPKRPKR LDWTIAEEEK LVHAWVYHSN DSITGNNQIG LSFWGQIAEI FNSTAEPSCR  180
RTAKQLKDHW NVYNREVTLF NGYYIQEERV RQSGADDAMV MEGAMARYEN DPKVTTEFKR  240
HHWWRATRPI GRDKAKTAKR KEKAKGKEKG KKSSSSSAVA SKVFAMKNMW GGLVKAKLFK  300
QWNIMKSRST ADMDEAEKRT HFKAVKMVEK EFGLDENSEE D*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644673.11e-100uncharacterized protein LOC103626074
RefseqXP_008662552.11e-100ribonuclease 3
TrEMBLA0A270R7G80.0A0A270R7G8_9POAL; Uncharacterized protein
STRINGGRMZM2G088005_P011e-100(Zea mays)
STRINGGRMZM2G169418_P011e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337