PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01624.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 299aa    MW: 31518.5 Da    PI: 6.6727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01624.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.77.2e-193174144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    krie    r+v fskRr g++KKA EL vLC+a vav++fs   
  Pahal.J01624.1 31 KRIERGAARHVCFSKRRSGLFKKAAELAVLCGAHVAVVVFSGAE 74
                    799999**********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.3482383IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-272382IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-252393IPR002100Transcription factor, MADS-box
CDDcd002651.55E-342497No hitNo description
PRINTSPR004044.2E-172545IPR002100Transcription factor, MADS-box
PfamPF003195.0E-223278IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-174560IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-176081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAEEAERRRG EAGGEQRKRK KTLGRQKIEI KRIERGAARH VCFSKRRSGL FKKAAELAVL  60
CGAHVAVVVF SGAEKPYSLG HPSVDAVVDR YLDPASAPAP GGQVVDQAVL EEFEREKERL  120
DKAIAAEARR REALDAAARA AGVPDSDDVG RAGMPDLLAT LAALGRVQAE ATQRMHEAIV  180
EEAMMQHCAA AVSGDASGAF YCAAGAGAFA ADGGASSRQG VMDAQMLMGG DANHASMPFA  240
PMTMPPYLPP PPFNYVSHHN QLAGYGYDIG DGCHDAAAAA AYGKEGYHGT TTACNFFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620RRRGEAGGEQRKRKK
21620RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.10.0MADS-box protein AGL71-like
TrEMBLA0A2S3HIJ90.0A0A2S3HIJ9_9POAL; Uncharacterized protein
STRINGPavir.Da00770.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-26AGAMOUS-like 61