PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01665.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 356aa    MW: 38855.9 Da    PI: 10.255
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01665.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.2e-16113147135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ C +t+Tp+WR gp g+ tLCn+CG++ r  g+
  Pahal.J01665.1 113 CVDCDATETPQWRAGPTGPGTLCNSCGVRRRAAGE 147
                     *****************************998775 PP
2GATA47.42.6e-15242276135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C +++Tp WR+gp g+ tLCnaCG++y   +l
  Pahal.J01665.1 242 CDHCASSSTPKWREGPKGPHTLCNACGVRYSQGRL 276
                     9*****************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.438107161IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-10107166IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-11109153No hitNo description
Gene3DG3DSA:3.30.50.102.3E-11112145IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.28E-8112143No hitNo description
PROSITE patternPS003440113138IPR000679Zinc finger, GATA-type
PfamPF003201.1E-12113146IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-11235289No hitNo description
PROSITE profilePS5011411.978236271IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-10236286IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13241273IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.78E-10242292No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003204.7E-13242275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
LPTPSISRRR QQETPFSDEP QPQPPGSGPS RSLPSAAACD MAGSGGAEGE RDGRLAYDAP  60
AWTLLLAAVS RKKRSRRGPA SSRSWAFRRP VPVPPPPEAK KPMARKATRA GRCVDCDATE  120
TPQWRAGPTG PGTLCNSCGV RRRAAGERWG ERRRPRRATA RSVSDQQPLQ ESRPIPDPES  180
PPDSQICEQE LAPAPKLVLV TSPPPATESL PALGMARTDP DSDQPSKKKK KPPAKTNEDK  240
LCDHCASSST PKWREGPKGP HTLCNACGVR YSQGRLLPEY RPQVSPTFKC REHASLHSEE  300
LELRRQRKDK QQQPVKLMPL LLPRPLDHLA SELPVGDIDD NSGVAAANPT DERRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805594.10.0biofilm regulator 1-like
TrEMBLA0A270R7M00.0A0A270R7M0_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.J06380.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-19GATA transcription factor 4