PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01717.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 231aa    MW: 26755.1 Da    PI: 6.1821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01717.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.68.2e-09308674127
             NAM  74 knratksgyWkatgk.dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyr 127
                      +r+t++g+W++  + dk +  +  +  l      gl++tL f+   + +g+ktdW+m ey+
  Pahal.J01717.1  30 LSRKTHQGRWEEIKSnDKLIAIRigQ--LpvpqyAGLRRTLEFH---HDDGTKTDWIMLEYH 86 
                     57899******887725555555440..356666*********9...78899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.0891110IPR003441NAC domain
SuperFamilySSF1019411.96E-1114108IPR003441NAC domain
PfamPF023652.2E-71786IPR003441NAC domain
SMARTSM006143.2E-9174226IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.367174230IPR003656Zinc finger, BED-type
SuperFamilySSF576674.64E-5177226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEGRVVDSPD LNASVDPWDL PTPRYFTSSL SRKTHQGRWE EIKSNDKLIA IRIGQLPVPQ  60
YAGLRRTLEF HHDDGTKTDW IMLEYHQVDE YNTHDLLLEE SMVFRKVIQI FKDAVKELEM  120
MWNGDDEEEE RYIGEREEEV EACMSTLLRD CLLGEVGQSD QSRVGKRKRT GAPEGGSEVW  180
LYFTKIYTMD PDRVYAVCHS CDRGYKGHSK NGTSHLKRHN MTCSSKHRKV *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807167.11e-162uncharacterized protein LOC112885745
TrEMBLA0A270R5661e-172A0A270R566_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411