PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01719.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 196aa    MW: 21993.3 Da    PI: 8.72
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01719.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1699181184
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     ++k++++s + +++ l+lp  f+e++g+ k+++  +tl+++ +  rsW+ ++    +s+++v + GW++F+++n++k+g+++++  
  Pahal.J01719.1  99 WIKKEINSTTVENR-LYLPPVFCEAIGILKPCT--VTLKTSMSctRSWQARVAPYDGSSHHVSGPGWRQFCRENRIKVGEVCTINI 181
                     68999999999885.***********9998885..6666655555*******66666667***********************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.361142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-7340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-8340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-1695193IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1698193IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.02498195IPR003340B3 DNA binding domain
CDDcd100174.26E-12100179No hitNo description
PfamPF023621.4E-13100192IPR003340B3 DNA binding domain
SMARTSM010195.8E-4100195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGYRLLQGWR LFCLDNSIEL GDICTFTVIE TTVWDVIATR CKETINHLCN ETPSASSRKH  60
NTMNNESSNK GEKRPKVSMT ALNKTSPRGC VFEIGPPAWI KKEINSTTVE NRLYLPPVFC  120
EAIGILKPCT VTLKTSMSCT RSWQARVAPY DGSSHHVSGP GWRQFCRENR IKVGEVCTIN  180
IFKTTLWHVI ISSPE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808159.11e-142putative B3 domain-containing protein Os04g0347400 isoform X1
RefseqXP_025808161.11e-142putative B3 domain-containing protein Os04g0347400 isoform X2
TrEMBLA0A270R5051e-142A0A270R505_9POAL; Uncharacterized protein
TrEMBLA0A2T8KGX81e-141A0A2T8KGX8_9POAL; Uncharacterized protein
TrEMBLA0A2T8KGZ81e-141A0A2T8KGZ8_9POAL; Uncharacterized protein
STRINGPavir.J00270.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.23e-09B3 family protein