PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01752.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 353aa    MW: 38880.8 Da    PI: 7.8507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01752.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.1e-10296344146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      r++W++ E++ l+++v ++G g+Wk I    +   + R+  ++k+++++
   Pahal.J01752.1 296 RKKWSEIEEKTLLEGVVKYGRGNWKDIKMAYPdvfEERSTVDLKDKFRN 344
                      789********************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-10293348IPR009057Homeodomain-like
PROSITE profilePS5129310.251294350IPR017884SANT domain
SuperFamilySSF466894.06E-13294346IPR009057Homeodomain-like
SMARTSM007175.1E-7295348IPR001005SANT/Myb domain
PfamPF002492.7E-8296345IPR001005SANT/Myb domain
CDDcd116601.46E-20297347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPQLAAADAF LILEFIAGNR RIPHGILAAL LAFLPPSFSP RTSPRLRKAL VLRALHAALH  60
AEDASSSFTL LGKARRVLAD PNAAACFPNQ LSFADSQEDH GARAAAAVGD LKRFLDHEWA  120
NLPPSMLELA ADRLAGHRSL QTWAASDHAN RTKLRLLVGE STEREILAKL MQDAPASNPP  180
IPPEVPDIAK DANDADGAQR NNAAYPSNQS NEADRAQGGI AEHQNVSIKG AQRVQLPEKS  240
VPASNKRNLV ERHPNASTYE WDGLGDSDDD RPVGKRELPP FERKPHPSPA CAHRMRKKWS  300
EIEEKTLLEG VVKYGRGNWK DIKMAYPDVF EERSTVDLKD KFRNMERHHE SA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802240.10.0uncharacterized protein LOC112881664 isoform X1
TrEMBLA0A2S3H5A50.0A0A2S3H5A5_9POAL; Uncharacterized protein
STRINGPavir.Bb03640.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.16e-10TRF-like 3