PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J02074.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 314aa    MW: 33512.6 Da    PI: 8.4713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J02074.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-184998255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Pahal.J02074.1 49 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 98
                    799******.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-3549112IPR001471AP2/ERF domain
PfamPF008477.1E-134998IPR001471AP2/ERF domain
PROSITE profilePS5103219.83649106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-2849106IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1949106IPR016177DNA-binding domain
CDDcd000182.04E-3149107No hitNo description
PRINTSPR003671.1E-75061IPR001471AP2/ERF domain
PRINTSPR003671.1E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MELQFQLPQS HPQQQCTYQL PVTKETKPSP RVRSKCGGGG GGGGGGGGKF VGVRQRPSGR  60
WVAEIKDTTQ KIRMWLGTFE TAEEAARAYD EAACLLRGAN TRTNFAAGAH ASSPDSPLAV  120
RIRGILNHKK LKKNAAPPTV NFFPAAYHRA GAITTAAATS STSTSTITTT TSSISPSSSP  180
SSSINFSMSS NGVRTPILPA QSIAEEVCRP YLISGSEELQ LASQQYGQSW ALNTSLPFTD  240
GCTMANNNAC SVAASSEVDK IKKEKELFDT DRVPNGGMDR VQDKELFDTG NDPSDSLWDL  300
PPIYPLPCRS LMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1539105471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042732e-69AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149632e-69AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-69CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699021.11e-138ethylene-responsive transcription factor RAP2-11
TrEMBLA0A2S3GWS00.0A0A2S3GWS0_9POAL; Uncharacterized protein
STRINGPavir.Bb00676.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-24related to AP2 11