PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J02109.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 167aa    MW: 18593.2 Da    PI: 9.9143
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J02109.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-191468256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Pahal.J02109.1 14 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 68
                    78889************************************************98 PP
2HD-ZIP_I/II125.81.9e-4014101188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr
  Pahal.J02109.1  14 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR 101
                     69*************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-191071IPR009057Homeodomain-like
PROSITE profilePS5007117.1841070IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-181273IPR009057Homeodomain-like
SMARTSM003891.1E-151274IPR001356Homeobox domain
PfamPF000462.8E-161468IPR001356Homeobox domain
CDDcd000862.82E-141471No hitNo description
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
SMARTSM003401.2E-1970113IPR003106Leucine zipper, homeobox-associated
PfamPF021832.6E-1070101IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
ALVAPDDDEG CNSRKKLRLT KEQSALLEDR FKEHSTLNPK QKAALAKQLN LRPRQVEVWF  60
QNRRARTKLK QTEVDCELLK RCCETLTEEN RRLHRELQQL RSFNHPHPAA FFMPAAALSI  120
CPSCERLTGA PATTTTTTTG GADRPKASGP GRVAHLFNPF TNSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218SRKKLRL
26270RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989841e-122FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798038.11e-119homeobox-leucine zipper protein HOX15-like
SwissprotA2Z4C49e-77HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
TrEMBLA0A2S3INL61e-118A0A2S3INL6_9POAL; Uncharacterized protein
STRINGPavir.Ib02193.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-61HD-ZIP family protein