PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG015400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 215aa    MW: 23740.7 Da    PI: 9.979
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.6e-203771135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Pavir.1KG015400.1.p 37 CAACHTTKTPLWRGGPEGPKSLCNACGIRYRKRRQ 71
                         9*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.6E-143175No hitNo description
SMARTSM004012.5E-183196IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.8223167IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.6E-163289IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.18E-143670No hitNo description
PfamPF003205.6E-183771IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESEREREME MEADPDSSSP SAGADAAATA SGETKACAAC HTTKTPLWRG GPEGPKSLCN  60
ACGIRYRKRR QALGHAPADT QQDQQRQPKR KAADPPAEDQ QQQLLPKKKA ADPPAEDQQP  120
PKKKAASAAS SSTTSTKKEK EKEKEKEKEK ERDRDRKRKD RQVTVELRVV GFGKEAVLKQ  180
RRQMRRDKCL SRLSEEEMAA VHLMALSSGV IYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149158KERDRDRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.44410.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG015400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674443e-42EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.17e-68GATA transcription factor 15-like
TrEMBLA0A2T7DB233e-67A0A2T7DB23_9POAL; Uncharacterized protein
STRINGPavir.Ab00108.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-12GATA transcription factor 15