PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG015400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 197aa    MW: 21753.5 Da    PI: 10.0298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG015400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23.1e-203771135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Pavir.1KG015400.2.p 37 CAACHTTKTPLWRGGPEGPKSLCNACGIRYRKRRQ 71
                         9*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-143175No hitNo description
SMARTSM004012.5E-183196IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.8223167IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-163289IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-133670No hitNo description
PfamPF003204.9E-183771IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MESEREREME MEADPDSSSP SAGADAAATA SGETKACAAC HTTKTPLWRG GPEGPKSLCN  60
ACGIRYRKRR QALGHAPADT QQDQQRQPKR KAADPPAEDQ QPPKKKAASA ASSSTTSTKK  120
EKEKEKEKEK EKERDRDRKR KDRQVTVELR VVGFGKEAVL KQRRQMRRDK CLSRLSEEEM  180
AAVHLMALSS GVIYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131140KERDRDRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.44411e-163callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG015400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674443e-42EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.11e-64GATA transcription factor 15-like
TrEMBLA0A2T7DB232e-63A0A2T7DB23_9POAL; Uncharacterized protein
STRINGPavir.Ab00108.1.p8e-92(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-12GATA transcription factor 15