PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG041100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 688aa    MW: 79579.8 Da    PI: 8.6286
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG041100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.5e-2295196190
                 FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                          +fYn+YA  vGFs++k+ ++ks    + ge+t+r f+C++ g ++ ++ +          + +++r  ++++t+C+a+++++k+  ++w+
  Pavir.1KG041100.1.p  95 NFYNSYALIVGFSTVKTGTYKSrekATLGEVTRRIFKCQRGGATRVKEAQeegqsskqqkHARKKRCDVVDKTNCQAEMVITKR-GDQWV 183
                          6****************9999955455689************9998887789999998766667778899**************.9**** PP

                 FAR1  78 vtkleleHnHela 90 
                          vt+l+leHnH+l 
  Pavir.1KG041100.1.p 184 VTRLNLEHNHNLL 196
                          **********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-2195196IPR004330FAR1 DNA binding domain
PfamPF105511.6E-30317410IPR018289MULE transposase domain
PfamPF044342.2E-4601636IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.606601637IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4612640IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MDAGRIIENT NDFDFGAEPC ISIADDNIEA TMRAEQTVEG VDSTINEENH IAEEDIEIFR  60
HNETVEVAIS LSQEGESQHV PRIDMEFETP EQAYNFYNSY ALIVGFSTVK TGTYKSREKA  120
TLGEVTRRIF KCQRGGATRV KEAQEEGQSS KQQKHARKKR CDVVDKTNCQ AEMVITKRGD  180
QWVVTRLNLE HNHNLLAPAL SKLLRFHRYL TDQEKAMIRT FTNVNVPNRK ILAFISFLRG  240
GMQFTNLTKK DVSNYRTRVL RESGQNDITQ VISFLRKKQA EDPHVLLFFD ADEENKVRNI  300
FWAYGASRSC YQEYGDVISF DTTYQTNRYN LKFAPFVGIN GHGDNLLFAG AVLSDETIPT  360
FRWLFSTFRA CMGGKAPISI ITDQDAAMRA AIELEFPHAI HRNCLFHIVS KAEILLGPAL  420
SGNEKFARDF YDIVYNPLTV EEFERLWQYM LNKHKVHHLK YLKAMYENRK KFIPLYFKDK  480
FFPFICSTSR SEGTNAIFKD NVGPTSSLIL FVQEFDRIVK NIDEKGNLRD KNKAQEKALL  540
HSTYTFERQA RDCYNTQIFY RFQQLVKATG RYQADEVEKD RVYMIYKSEE HAKHEVRPRK  600
YLVLVDLIQE NYTCICARFQ KDGILCVHVL RTLIQLNKHT IPEKYFIDRW RPVEKKQVRI  660
LQLCGGMRLR TVGGVKISNG TSLIGII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG041100.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J19214.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-96FAR1-related sequence 5