PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG042900.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 350aa MW: 38074.3 Da PI: 7.0712

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG042900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.7	6.1e-34	254	308	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++LGG+ekAtPk +l+lmkv+gLt++hvkSHLQkYR Pavir.1KG042900.2.p 254 KPRLRWTLELHERFVEAVNKLGGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRF 308 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.484	251	311	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-31	253	309	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-17	253	308	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-25	254	308	IPR006447	Myb domain, plants
Pfam	PF00249	9.1E-10	256	307	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAQTCTTPQP SAHSLFSAKS DHCGSAYDPQ SSCASAQSSS VKSEMIGSLS LTKILPLDLH 60 KRSPESNPER SASRASQTQL SDPVSSSSSS TFHTSMFSSF RTSSESCRQK GALPFLPHPP 120 KCEQQQQISA QQSSSSSSLL FGADLSNGSH DDAEHSGDLK DFLNLSGDVS EGSFHGESDA 180 MAFSEQMEFQ FLSEQLGMAI TNNEESPRLD DIYDRPPQTS SCTVPSYSNQ ENLPSPVSVV 240 KVQLSSSRAE ACNKPRLRWT LELHERFVEA VNKLGGPEKA TPKGVLKLMK VEGLTIYHVK 300 SHLQKYRFAK YLPETKEDKK SSSEGKKSQL VIPGNDSDKK KCKGNYSCT*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAQTCTTPQP SAHSLFSAKS DHCGSAYDPQ SSCASAQSSS VKSEMIGSLS LTKILPLDLH  60
KRSPESNPER SASRASQTQL SDPVSSSSSS TFHTSMFSSF RTSSESCRQK GALPFLPHPP  120
KCEQQQQISA QQSSSSSSLL FGADLSNGSH DDAEHSGDLK DFLNLSGDVS EGSFHGESDA  180
MAFSEQMEFQ FLSEQLGMAI TNNEESPRLD DIYDRPPQTS SCTVPSYSNQ ENLPSPVSVV  240
KVQLSSSRAE ACNKPRLRWT LELHERFVEA VNKLGGPEKA TPKGVLKLMK VEGLTIYHVK  300
SHLQKYRFAK YLPETKEDKK SSSEGKKSQL VIPGNDSDKK KCKGNYSCT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-27	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.6857	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269\|PubMed:26082401}.
Uniprot	TISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG042900.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799346.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-124	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3L6RXI3	0.0	A0A3L6RXI3_PANMI; Protein PHR1-LIKE 1-like
STRING	Pavir.J14911.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	3e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG042900.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]