PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG046200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 744aa    MW: 82918.1 Da    PI: 7.4637
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG046200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-08454497952
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +  +e+L + F++n  p ++ +e L+k+l+++ +++  WF+N R
  Pavir.1KG046200.1.p 454 PAAVEVLRKSFAENELPPRDVKENLSKELDISFEKIDKWFKNTR 497
                          67799*************************************99 PP
2PHD33.21.2e-11197251150
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ C++  s  + +++lC+g Ck+++H kCl+++le++  p +   wlC+ C +
  Pavir.1KG046200.1.p 197 MCSTCKSheSFPNYKIILCEGaCKRAYHEKCLEPPLEKNALPTSslGWLCKFCLC 251
                          6******6555599*****966********************999********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.47E-12193254IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.3E-11194252IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.997195252IPR019787Zinc finger, PHD-finger
PfamPF006283.9E-9197251IPR019787Zinc finger, PHD-finger
SMARTSM002492.7E-6197250IPR001965Zinc finger, PHD-type
PROSITE patternPS013590198249IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.7E-10438497IPR009057Homeodomain-like
SMARTSM003891.3E-8443507IPR001356Homeobox domain
PROSITE profilePS5007111.693443503IPR001356Homeobox domain
SuperFamilySSF466892.95E-9445511IPR009057Homeodomain-like
CDDcd000861.18E-8447507No hitNo description
PfamPF000463.8E-6454497IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MHSSENKMVC SNSGRSSKRR KETSSDLVPV SNRPSRRNAS RRCKFDSPSK RSPRKVRNAT  60
LAKSIKKKYH CSPLKRRKDS DSVAGNIVRG LVTRRKKKRK RQNIDEAIRL ERRARYFLIK  120
IKLEQNLLDA YSGDGWNGQS REKIKPEKEL QRAKKQIIKC KIAIRDVIRQ LDLYNSTWGV  180
DDPVMPPVAP TNSEHIMCST CKSHESFPNY KIILCEGACK RAYHEKCLEP PLEKNALPTS  240
SLGWLCKFCL CKVKILDAIN AHLGTNFTVK CPFEDVFKEA TEQIDSEDAL DEDWLSEYSG  300
DEDYDPEENE ANSSCMNSGE EIMSDDSNGS GSPLYSPNDD IPEFISAEFN NAEGFCHANL  360
DLGIDSSEDD CAQVLTYQRP RRDVDYRRLN EEMFGKIIEN EEPSEDEDWG HDRRKKRKTR  420
ARSDGDNSVE GFSNLISDEK IQQKKGRKLF RIPPAAVEVL RKSFAENELP PRDVKENLSK  480
ELDISFEKID KWFKNTRCAA LRDRKAEGNS HNIAPSKSSR SKGKAGISGK AERNGHVTST  540
SNNLGTSEEK AGISGKVDSG DNSCFVPLSE IINVPTRLQR NLEKRKMEST SSPVRQACSP  600
TDQVKESMSP TSKSCLWTDL SHPINNEVIA GWQAASQIDS GACAEEQAAP HMDTGACAEE  660
QAAPHMDTGA CAEEQAAPLV DVGASDYQPF LDVIDEMCGL ECRLQKLKKN MLSSGAVGCG  720
NGGSDMKNQA VVLVPSAELK EKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17597RRKDSDSVAGNIVRGLVTRRKKK
29398RRKKKR
39399RRKKKRK
494100RKKKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.187990.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG046200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814275.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2T7F1U10.0A0A2T7F1U1_9POAL; Uncharacterized protein
STRINGPavir.Ab00383.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-86pathogenesis related homeodomain protein A