PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG096500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 197aa    MW: 20507 Da    PI: 8.0984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG096500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-191666155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Pavir.1KG096500.1.p 16 SRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 66
                         789*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.24E-181674No hitNo description
PfamPF008473.0E-131666IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-221675IPR016177DNA-binding domain
PROSITE profilePS5103223.4461774IPR001471AP2/ERF domain
SMARTSM003803.4E-361780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-311774IPR001471AP2/ERF domain
PRINTSPR003672.9E-101829IPR001471AP2/ERF domain
PRINTSPR003672.9E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRRGGGAAAA DWDVESRFRG VRKRPWGRYA AEIRDPAKKA RVWLGTFDSA EDAARAYDAA  60
ARMLRGPRAK TNFPLPASAA AATYTPYTTP GVSTPPVAMP ACSSLSSTVE SFGGARPRPV  120
LPPRSPPPPI PDGDCRSDCG SSASVVDDDC TDAAASPSCR LPLPFDLNLP AGAGCGAGVG  180
WYGGEEDELR LTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-221679468ATERF1
3gcc_A8e-221679468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG096500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282069e-98KJ728206.1 Zea mays clone pUT6482 AP2-EREBP transcription factor (EREB138) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951621.11e-92ethylene-responsive transcription factor 3-like
SwissprotO803392e-32ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A368PHF42e-91A0A368PHF4_SETIT; Uncharacterized protein
STRINGPavir.Ab00660.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-21ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]