PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG140800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 304aa    MW: 32827.5 Da    PI: 5.0187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG140800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.87.9e-14111331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgk 88 
                          lppG+ FhP+d+elv ++L + v+g++  l    + v +  +e + L      +++e yfF+++++ +++   r+ r  +  ++W ++  
  Pavir.1KG140800.1.p  11 LPPGLNFHPNDDELVEFFLLPTVRGEPAWL----PGVIL--LERHGLA-----GDDEAYFFVRTKQDATKeAARQDRyCAGGARWVSQR- 88 
                          79*************************555....55444..4555785.....78999***99888777537799996666777*9765. PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                            +v+ +    +++  + +  L +  gr ++g    +t Wvmhey+l
  Pavir.1KG140800.1.p  89 --PVFGAscigGERIEWRRINLNLQMGRGRSGGgsgSTGWVMHEYTL 133
                          ..55554455355555666679999777666544469********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-214148IPR003441NAC domain
PROSITE profilePS5100519.70411149IPR003441NAC domain
PfamPF023652.5E-1212133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSTKAAVAIG LPPGLNFHPN DDELVEFFLL PTVRGEPAWL PGVILLERHG LAGDDEAYFF  60
VRTKQDATKE AARQDRYCAG GARWVSQRPV FGASCIGGER IEWRRINLNL QMGRGRSGGG  120
SGSTGWVMHE YTLTEPACPS LKICHVSFSG HGKDRKRVPD EDGSSTCVYG PTAPAIDQGQ  180
GYGTSGDVFL PQLHAGQQEH SLPLQIDQGI SATAHQQHPL PEDENATNIS SLTCSYEPMQ  240
ATDEQILDWG SSLADDTEPT AEQQEHSPSS FPIDQGISST AQQKQPLQVS HRRPLSLLGL  300
GLC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG140800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.12e-52NAC domain-containing protein 48
TrEMBLA0A2T8KV331e-124A0A2T8KV33_9POAL; Uncharacterized protein
STRINGPavir.J24268.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-08NAC domain containing protein 86