PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG143200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 114aa MW: 11853.2 Da PI: 9.9548

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG143200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4.2e-10	4	34	19	48
TTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +G++ W++Ia++++ gRt++++k+ w+++l Pavir.1KG143200.1.p 4 HGMPgnKWSKIAACLP-GRTDNEIKNVWNTHL 34 5555557*******.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.615	1	38	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-15	2	35	IPR009057	Homeodomain-like
CDD	cd00167	7.12E-8	2	34	No hit	No description
SuperFamily	SSF46689	9.36E-10	3	40	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-8	7	34	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MRLHGMPGNK WSKIAACLPG RTDNEIKNVW NTHLKKKVAL REQQQKAGAA TKNGAGAGTP 60 VTDSSSASSS TTTTNNRSGG SDSGDQCGTS KEPDAAADAS PLRECLLDTR LRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG143200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152187.1	3e-33	myb-related protein Zm1
Swissprot	P20024	2e-33	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A291FGK9	3e-32	A0A291FGK9_MISSI; Secondary cell wall MYB 4
STRING	Pavir.Ea03006.1.p	2e-77	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	2e-15	myb domain protein 63

Link Out ? help Back to Top
Phytozome	Pavir.1KG143200.1.p

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]