PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG159300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 99aa    MW: 10983.4 Da    PI: 9.1098
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG159300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.57.7e-321396294
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
         HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93
                         F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h  F +g+++l
  Pavir.1KG159300.1.p 13 FVAKTYRMVDDPSTDAVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVAFLRGHTHL 95
                         9****************************************************************999.........************998 PP

                         X CS
         HSF_DNA-bind 94 l 94
                         l
  Pavir.1KG159300.1.p 96 L 96
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-37696IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-32997IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-44998IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-281396IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASVDAAAGV APFVAKTYRM VDDPSTDAVI AWGRDSNSFV VADPFAFSQT LLPAHFKHSN  60
FSSFVRQLNT YGFRKVDPDR WEFAHVAFLR GHTHLLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2389615114Heat shock factor protein 1
5d5u_B2e-2369619123Heat shock factor protein 1
5d5v_B2e-2369619123Heat shock factor protein 1
5d5v_D2e-2369619123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.46546e-70callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG159300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064884e-92AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
GenBankBT0418054e-92BT041805.1 Zea mays full-length cDNA clone ZM_BFb0058D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799113.13e-61heat stress transcription factor C-2a-like
SwissprotQ6EUG43e-56HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A2T7F4134e-60A0A2T7F413_9POAL; Uncharacterized protein
STRINGPavir.Ab00907.1.p5e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-44heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]